- Class: 3
- Architecture: 3.40:3-Layer(aba) Sandwich
- Topology: 3.40.50:Rossmann fold
- Homology: 3.40.50.1260:Phosphoglycerate kinase, N-terminal domain
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
13pk | [A] | [A] | [A] | 2.5 | 3PG:3-PHOSPHOGLYCERIC ACID ADP:ADENOSINE-5___sq___-DIPHOSPHATE MG:MAGNESIUM ION PO4:PHOSPHATE ION | |||
16pk | [A] | [A] | [A] | 1.6 | BIS:1,1,5,5-TETRAFLUOROPHOSPHOPENTYLPHOSPHONIC ACIDADENYLATE ESTER EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | |||
1fw8 | [A] | [A] | [A] | 2.3 | ACE:ACETYL GROUP GOL:GLYCEROL | |||
1hdi | [A] | [A] | [A] | 1.8 | 3PG:3-PHOSPHOGLYCERIC ACID AMP:ADENOSINE MONOPHOSPHATE MG:MAGNESIUM ION | |||
1kf0 | [A] | [A] | [A] | 2.5 | 3PG:3-PHOSPHOGLYCERIC ACID ACP:PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER MG:MAGNESIUM ION | |||
1ltk | [A] | [A] | [A] | 3 | AMP:ADENOSINE MONOPHOSPHATE GOL:GLYCEROL MSE:SELENOMETHIONINE SO4:SULFATE ION | |||
1php | [A] | [A] | [A] | 1.65 | ADP:ADENOSINE-5___sq___-DIPHOSPHATE MG:MAGNESIUM ION | |||
1qpg | [A] | [A] | [A] | 2.4 | 3PG:3-PHOSPHOGLYCERIC ACID MAP:MAGNESIUM-5___sq___-ADENYLY-IMIDO-TRIPHOSPHATE | |||
1v6s | [A] | [A] | [A] | 1.5 | GOL:GLYCEROL NA:SODIUM ION | |||
1vjc | [A] | [A] | [A] | 2.1 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE MG:MAGNESIUM ION | |||
1vjd | [A] | [A] | [A] | 1.9 | ATP:ADENOSINE-5___sq___-TRIPHOSPHATE PO4:PHOSPHATE ION | |||
1vpe | [A] | [A] | [A] | 2 | 3PG:3-PHOSPHOGLYCERIC ACID ANP:PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER MG:MAGNESIUM ION | |||
1zmr | [A] | [A] | [A] | 2.4 | CA:CALCIUM ION | |||
2cun | [A2] | [A2] | [A2] | 2.1 | 3PG:3-PHOSPHOGLYCERIC ACID CL:CHLORIDE ION GOL:GLYCEROL MPD:(4S)-2-METHYL-2,4-PENTANEDIOL | |||
2ie8 | [A] | [A] | [A] | 1.8 | ||||
2p9q | [A] | [A] | [A] | 2.7 | ||||
2p9t | [A] | [A] | [A] | 2 | 3PG:3-PHOSPHOGLYCERIC ACID | |||
2paa | [A] | [A] | [A] | 2.7 | 3PG:3-PHOSPHOGLYCERIC ACID ATP:ADENOSINE-5___sq___-TRIPHOSPHATE | |||
2wzb | [A] | [A] | [A] | 1.47 | 3PG:3-PHOSPHOGLYCERIC ACID ADP:ADENOSINE-5___sq___-DIPHOSPHATE CL:CHLORIDE ION MG:MAGNESIUM ION MGF:TRIFLUOROMAGNESATE | |||
2wzc | [A] | [A] | [A] | 1.5 | 3PG:3-PHOSPHOGLYCERIC ACID ADP:ADENOSINE-5___sq___-DIPHOSPHATE ALF:TETRAFLUOROALUMINATE ION CL:CHLORIDE ION MG:MAGNESIUM ION | |||
2wzd | [A] | [A] | [A] | 1.56 | 3PG:3-PHOSPHOGLYCERIC ACID ADP:ADENOSINE-5___sq___-DIPHOSPHATE AF3:ALUMINUM FLUORIDE CL:CHLORIDE ION MG:MAGNESIUM ION | |||
2x13 | [A] | [A] | [A] | 1.74 | 3PG:3-PHOSPHOGLYCERIC ACID ADP:ADENOSINE-5___sq___-DIPHOSPHATE MG:MAGNESIUM ION | |||
2x14 | [A] | [A] | [A] | 1.9 | 3PG:3-PHOSPHOGLYCERIC ACID ACP:PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER MG:MAGNESIUM ION | |||
2x15 | [A] | [A] | [A] | 2.1 | 3PG:3-PHOSPHOGLYCERIC ACID ADP:ADENOSINE-5___sq___-DIPHOSPHATE ATP:ADENOSINE-5___sq___-TRIPHOSPHATE MG:MAGNESIUM ION X15:1,3-BISPHOSPHOGLYCERIC ACID | |||
2xe6 | [A] | [A] | [A] | 1.74 | 3PG:3-PHOSPHOGLYCERIC ACID | |||
2xe7 | [A] | [A] | [A] | 2.2 | 3PG:3-PHOSPHOGLYCERIC ACID ADP:ADENOSINE-5___sq___-DIPHOSPHATE | |||
2xe8 | [A] | [A] | [A] | 1.79 | 3PG:3-PHOSPHOGLYCERIC ACID ACP:PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER | |||
2y3i | [A] | [A] | [A] | 2.9 | 3PG:3-PHOSPHOGLYCERIC ACID ALF:TETRAFLUOROALUMINATE ION CL:CHLORIDE ION LA8:L-ADENOSINE-5___sq___-DIPHOSPHATE MG:MAGNESIUM ION | |||
2ybe | [A] | [A] | [A] | 2 | 3PG:3-PHOSPHOGLYCERIC ACID ALF:TETRAFLUOROALUMINATE ION CL:CHLORIDE ION LA8:L-ADENOSINE-5___sq___-DIPHOSPHATE MG:MAGNESIUM ION | |||
2zgv | [A] | [A] | [A] | 2 | ADP:ADENOSINE-5___sq___-DIPHOSPHATE | |||
3c39 | [A] | [A] | [A] | 1.85 | 3PG:3-PHOSPHOGLYCERIC ACID | |||
3c3a | [A] | [A] | [A] | 2.3 | 3PG:3-PHOSPHOGLYCERIC ACID ADP:ADENOSINE-5___sq___-DIPHOSPHATE MG:MAGNESIUM ION | |||
3c3b | [A] | [A] | [A] | 1.8 | CDP:CYTIDINE-5___sq___-DIPHOSPHATE PO4:PHOSPHATE ION | |||
3c3c | [A] | [A] | [A] | 2.4 | 3PG:3-PHOSPHOGLYCERIC ACID CDP:CYTIDINE-5___sq___-DIPHOSPHATE MG:MAGNESIUM ION | |||
3oz7 | [A2] | [A2] | [A2] | 2.7 | SO4:SULFATE ION | |||
3oza | [A2] | [A2] | [A2] | 3 | GOL:GLYCEROL MSE:SELENOMETHIONINE SO4:SULFATE ION | |||
3pgk | [A] | [A] | [A] | 2.5 | 3PG:3-PHOSPHOGLYCERIC ACID ACE:ACETYL GROUP ATP:ADENOSINE-5___sq___-TRIPHOSPHATE MG:MAGNESIUM ION | |||
3q3v | [A] | [A] | [A] | 2.15 | FMT:FORMIC ACID K:POTASSIUM ION MSE:SELENOMETHIONINE PGE:TRIETHYLENE GLYCOL SO4:SULFATE ION | |||
3uwd | [A] | [A] | [A] | 1.68 | BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL CL:CHLORIDE ION MG:MAGNESIUM ION MSE:SELENOMETHIONINE UNL:UNKNOWN LIGAND | |||
3zlb | [A] | [A] | [A] | 1.78 | ANP:PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER GOL:GLYCEROL MG:MAGNESIUM ION | |||
3zoz | [A] | [A] | [A] | 1.95 | 3PG:3-PHOSPHOGLYCERIC ACID ADP:ADENOSINE-5___sq___-DIPHOSPHATE BR:BROMIDE ION MG:MAGNESIUM ION MGF:TRIFLUOROMAGNESATE | |||
4axx | [A] | [A] | [A] | 1.74 | 3PG:3-PHOSPHOGLYCERIC ACID ADP:ADENOSINE-5___sq___-DIPHOSPHATE BEF:BERYLLIUM TRIFLUORIDE ION CL:CHLORIDE ION MG:MAGNESIUM ION | |||
4dg5 | [A] | [A] | [A] | 2.3 | ||||
4ehj | [A] | [A] | [A] | 2.71 | MSE:SELENOMETHIONINE SO4:SULFATE ION | |||
4fey | [A] | [A] | [A] | 2.3 | ADP:ADENOSINE-5___sq___-DIPHOSPHATE | |||
4ng4 | [A] | [A] | [A] | 2.78 | ADP:ADENOSINE-5___sq___-DIPHOSPHATE MG:MAGNESIUM ION | |||
4o33 | [A] | [A] | [A] | 2.1 | 3PG:3-PHOSPHOGLYCERIC ACID TZN:[4-(4-AMINO-6,7-DIMETHOXYQUINAZOLIN-2-YL)PIPERAZIN-1-YL][(2R)-TETRAHYDROFURAN-2-YL]METHANONE | |||
4o3f | [A] | [A] | [A] | 2.11 | 3PG:3-PHOSPHOGLYCERIC ACID TZN:[4-(4-AMINO-6,7-DIMETHOXYQUINAZOLIN-2-YL)PIPERAZIN-1-YL][(2R)-TETRAHYDROFURAN-2-YL]METHANONE | |||
5bt8 | [A] | [A] | [A] | 2.3 | ||||
5m1r | [A] | [A] | [A] | 1.64 | ADP:ADENOSINE-5___sq___-DIPHOSPHATE MG:MAGNESIUM ION | |||
5m3u | [A] | [A] | [A] | 1.81 | 3PG:3-PHOSPHOGLYCERIC ACID ADP:ADENOSINE-5___sq___-DIPHOSPHATE MG:MAGNESIUM ION | |||
5m6z | [A] | [A] | [A] | 1.67 | 3PG:3-PHOSPHOGLYCERIC ACID ADP:ADENOSINE-5___sq___-DIPHOSPHATE MG:MAGNESIUM ION PO4:PHOSPHATE ION | |||
5mxm | [A] | [A] | [A] | 2.05 | 3PG:3-PHOSPHOGLYCERIC ACID ADP:ADENOSINE-5___sq___-DIPHOSPHATE BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL MG:MAGNESIUM ION | |||
5np8 | [A] | [A] | [A] | 1.9 | 3PG:3-PHOSPHOGLYCERIC ACID 93T:3-[2-(4-BROMOPHENYL)-5,7-DIMETHYL-PYRAZOLO[1,5-A]PYRIMIDIN-6-YL]PROPANOIC ACID EDO:1,2-ETHANEDIOL | |||
5o7d | [A] | [A] | [A] | 1.84 | ADP:ADENOSINE-5___sq___-DIPHOSPHATE |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA